Science Page: African swine fever experience in a large commercial system in the Russian Federation

This is our Friday rubric: every week a new Science Page from the Bob Morrison’s Swine Health Monitoring Project. The previous editions of the science page are available on our website.

This week, we are sharing the experience Dr. Gustavo Lopez, a PhD candidate at the University of Minnesota, had dealing with African Swine Fever in Russia.

Key points:

  • Infected pigs can be asymptomatic carriers of African swine fever virus (ASFv)
  • Timely detection with diagnostic testing, strict biosecurity measures and rapid removal of the source of infection are key to limit the transmission of the virus within and between sites.

In December 2014, ASFv was detected in a finishing site of a multiplier herd from a large commercial pig company located in the Russian Federation. The region had multiple reports of ASFv in backyard pigs before the outbreak. The affected company consisted of 80,000 sows in 15 farms organized as a three-site production system with each sow farm having a dedicated nursery and two finishers. The multiplier herd supplied gilts from the finisher to the gilt development unit (GDUs) for each farm. Each sow farm had a quarantine within the farm to receive the gilts from the GDU .

A 3% mortality increase was reported in one room of the finishing site. A few pens in one of the rooms had pigs affected with fever, purple ear and mild scouring. The site was being monitored for ASFv on a weekly basis before gilt shipment, following local regulations and results always came back negative.

Samples collected from the affected pigs were negative for ASFv, Classical Swine Fever, PRRSv, and Salmonella so the decision was made to resume shipment of gilts from a room with no clinical signs to the GDU.

As the days progressed, the clinical signs in the affected room worsened and affected more pens. The GDU that had just received gilts reported similar clinical signs and diagnostics on samples collected then from the multiplier finisher and the GDU confirmed the presence of ASFv at both sites.

At that time, all pig movements were stopped and a 5km quarantine area was imposed around the two affected sites. Gilts that had been sent from the GDU to five commercial sow farms, and were in quarantine tested negative to ASFv. Nevertheless as a precaution, the decision was taken to sacrifice all the gilts in the quarantines.

Protocols mandated by the government were implemented in the ASFv positive multiplier finisher and GDU which consisted of euthanasia of all pigs within a 5km radius, destruction with burial and burning of all carcasses, strict movement restrictions for vehicles and people and exhaustive disinfection protocols inside the farm and its territory.

Transportation of infected non-symptomatic animals from the multiplier finisher was the most likely route of infection to the GDU. The source of infection to the multiplier finisher is unknown, although people are thought to have played a role given the presence of ASFv in backyard farms in the area. Events such as introduction of infected pork meat, lack of proper disinfection of 3rd party trucks or non-compliance with the shower-in policy of the farm could not be ruled out. The outbreak occurred in December when temperatures were below zero Celsius and wild pig-tick-domestic pig interaction was unlikely.

It is important to point out that 12 of the 16 rooms in the multiplier finisher remained negative to ASFv until the moment of euthanasia. The sow farm and nursery multiplier were monitored for ASFv during the quarantine period and until the moment of euthanasia 6 months later. During this time, they remained negative to ASFv, even though they were within close proximity to the affected farm. Our experience indicates that a timely detection of ASFv with testing, strict biosecurity measures and removal of the source of infection as soon as possible can limit the transmission of the virus between sites.

 

Funeral Information for Dr. Michael Murtaugh

Michael Murtaugh
Dr. Mike Murtaugh

Professor Michael Murtaugh, PhD, passed away last Tuesday from complications related to his ongoing battle with pancreatic cancer. He was 67. A memorial service will be held Saturday, September 29 at 11 a.m. at Calvary Church in Roseville. Visitation is from 9 to 11 a.m. at the church.

Mike joined the college in 1985 and spent his University of Minnesota career in the Department of Veterinary and Biomedical Sciences. He was a consummate faculty member, excelling in teaching courses and conducting research and outreach. Mike authored more than 225 peer-reviewed journal articles, was the primary advisor for 30 Master’s and PhD students, and held three U.S. patents. At the time of his death, Mike was serving on the editorial boards of more than a dozen academic journals, and had successfully completed nearly 160 sponsored projects as a PI or co-PI.

He was an international leader in battling the porcine reproductive and respiratory syndrome virus (PRRSv) that costs U.S. swine producers alone nearly $500 million annually. Mike used molecular biology to first understand the PRRSv pathogen and immunology to evaluate the pig’s immune response. His lasting legacy is a generation of scientifically-trained swine health specialists.

Mike earned his BS in biology at the University of Notre Dame and then served as a Peace Corps volunteer in Venezuela. He earned a PhD in entomology at The Ohio State University. The University of Texas Medical School in Houston was his next stop—spending four years in a post-doctoral position in the departments of internal medicine and pharmacology—before arriving in St. Paul.

He will be remembered for his dry sense of humor, a character trait that he maintained even as his battle with cancer raged. Mike cared passionately about science and derived some of his greatest personal satisfaction working on the collegiate strategic plan and the International Conference on One Medicine and One Science. Mike cared deeply about science informing policy and saw the need for scientists to be more actively involved in communicating about their research. I am grateful to have known him, and stand in awe of the many contributions he made to our college.

Dean Trevor Ames
College of Veterinary Medicine
University of Minnesota

Science Page: Within farm PRRS time-to-stability differences in sow farms in the Midwest

This is our Friday rubric: every week a new Science Page from the Bob Morrison’s Swine Health Monitoring Project. The previous editions of the science page are available on our website.

This week, we are sharing a report by the MSHMP team regarding PRRS time-to-stability differences in sow farms.

Keypoints:

  • There is significant within farm PRRS time-to-stability variation.
  • Several factors contribute to PRRS time-to-stability variability; however, there is still a significant amount of unexplained variability.
  • The role of within farm management practices and internal biosecurity measures should be further explored.

Introduction

Porcine reproductive and respiratory syndrome (PRRS) stability is reached when no evidence of infection is observed in wean-age piglets. Sample size to detect PRRS virus in wean-age piglets usually involves blood sampling of 30 piglets, at least four times, 30 days apart (Holtkamp et al., 2011). The cumulative time from the intervention (i.e. whole herd exposure, herd closure) to PRRS stability is usually referred to as time-to-stability (TTS).

Here we summarize differences in TTS in MSHMP participating farms located in the Midwest that have had at least two PRRS outbreaks.

Methods

Six systems that are similar in the way they test to classify a herd as stable were selected for inclusion in the study. PRRS outbreaks reported from 2011 to 2017 were used for analysis.

TTS was defined as the time period from the date of outbreak reporting to the date when PRRS stability was reported (last consecutive negative PCR result). To assess the variability in TTS, only farms that had at least two PRRS outbreaks were selected.

Results

Overall, 133 PRRS outbreaks in 53 farms were recorded withtwo, three, four and five outbreaks in 35, 11, 5, 2 farms, respectively. The median TTS standard deviation of PRRS outbreaks within the same farm was 12 weeks (minimum = 0 weeks, maximum=88 weeks).

After accounting for the effect of the intervention using MLV or FVI, the RFLP pattern of the virus associated with the outbreak and previous PRRS outbreaks in the farm, the PRRS time-to-stability correlation of outbreaks in the same farm and system was only 1.2%.

In other words, TTS of two given outbreaks in the same farm were not correlated indicating that TTS within farm is highly variable.

Conclusion

There is a high TTS variability after a PRRS outbreak within the same farm that is not accounted for by the effect of the intervention used, the virus (i.e RFLP), previous PRRS outbreaks in the farm and system.

African Swine Fever: 2 podcasts available

We are coming back with 2 new podcasts on African Swine Fever today.

First podcast on African Swine Fever

In this first of a two part episode of At The Meeting Honoring Dr. Bob Morrison, we share a conversation on African Swine Fever or ASF.

Dr. Montse Torremorell joins Dr. Tom Wetzel and Dr. Gordon Spronk with special guest Dr. Liz Wagstrom, Chief Veterinarian for the National Pork Producers Council, to talk about ASF and how it is the most feared disease in pigs in the world.

Take away:

  1. Having ASF in the United States would impact trade
  2. ASF is a hardy virus (hard to eradicate and lives in extreme conditions), and
  3. there is no vaccine.

The U.S. pork industry is taking action now by making sure laboratory capacity is up to date, looking at identifying and categorizing higher risk transmission paths plus their mitigation plans, and improving the approach to surveillance and risk planning and implementation.

Second podcast on African Swine Fever

In this second of a two part episode of At The Meeting Honoring Dr. Bob Morrison, we continue our conversation on African Swine Fever or ASF. Dr. Montse Torremorell joins Dr. Tom Wetzel and Dr. Gordon Spronk with special guest Brad Heron, Director of Operations of Cherkizovo (pronounced “Chair-Kee-Zi-Vo”) in Russia. Brad offers a personal, boots on the ground perspective on ASF.

Brad shares several stories of how ASF was discovered and handled on the Russian farms he helps run. The early disease indicators were confusing due to other animal diseases also running its course so ASF was not discovered as early as they had thought they would.

Brad highlights what happened to the operations when ASF was discovered, actions they had to take, and the Russian regulations they had to work with requiring depopulations within a five mile radius. He also summarizes the biosecurity changes they made to defend against ASF, including transportation tracking, multiple testing points through out the operations, and physical farm and people security improvements.

The number one key take away from Brad: Have good testing; if you don’t test, you don’t have the ability discover outbreaks.

Remember that this afternoon a special session will be held at the Leman Conference regarding African Swine Fever.

Science Page: Salmonella monophasic harboring plasmid mediated resistance genes to enrofloxacin and ceftiofur is expanding in swine in the Midwest

This is our Friday rubric: every week a new Science Page from the Bob Morrison’s Swine Health Monitoring Project. The previous editions of the science page are available on our website.

This week, we are sharing a report by Dr. Elnekave and the STEMMA lab regarding a multiresistant clad of Salmonella isolated in the Midwest.

Key Points:

  • A genetically distinct clade of Salmonella 4,[5],12:i:- (also referred to as S. monophasic), harboring multiple antimicrobial resistance genes (including to ampicillin,streptomycin, sulfonamides, and tetracyclines) became the predominant S. monophasic type in swine in the U.S. during 2014-2016.
  • Phenotypic resistance to enrofloxacin (fluoroquinolone) and ceftiofur (3rd generation cephalosporin) was present in a proportion these isolates, and whole genome sequencing revealed the presence of the plasmid-mediated genes.
  • These plasmid-mediated resistance genes could potentially transfer horizontally to other microorganisms and augment the problem of antimicrobial resistance to these critically important antibiotics.

S. monophasic emerged globally in the recent years and pig products have been identified as a source in some foodborne outbreaks. The prevalence of S. monophasic, and phenotypic resistance (minimum inhibitory concentration (MIC) above the cut-off value for this bacteria) to enrofloxacin increased in swine clinical samples in the Midwest during 2006 and 2016.

During this period, injectable enrofloxacin was approved by the Food and Drug Administration (FDA) for treatment of swine respiratory disease and colibacillosis in piglets (in 2008 and 2014, respectively); therefore, the objective of the study was to characterize the S. monophasic in swine in the U.S Midwest.

Salmonella genotypic profile
Maximum likelihood tree of S. monophasic collected in the U.S. and Europe during 1991-2016. Tip colors indicate of the period of sample collection: 1991-2009 (red), 2010-2013 (green), 2014-2016 (turquoise) and not available (n.a.; purple). The location of samples collection is indicated by the background color: Europe (red), U.S. (blue) and not available (green). ASSUT= presence of resistance genes against ampicillin, streptomycin, sulfonamides, and tetracyclines. qnr genes – conferring resistance to quinolones.

We used whole genome sequencing to compare S. monophasic isolates collected from livestock in the Midwest with isolates collected from different sources in the U.S. and Europe. We then determined the antimicrobial resistance genotypes and presence of other virulence factors that could help to explain the emergence of this variant.

Salmonella monophasic formed two main genetic clades regardless of source and geographical origin (Figure 1). Most (84%) isolates recovered in the U.S. during 2014-2016, including 50 isolates (out of 51) originating mainly from swine in the Midwest, were part of an emerging clade genotypically resistant to ampicillin, streptomycin, sulphonamides and tetracyclines. In the Midwest samples, phenotypic resistance to enrofloxacin (11 out of 50; 22%) and ceftiofur (9 out of 50; 18%) was found in conjunction with plasmid-mediated resistance genes. This is of particular concern because fluoroquinolones and 3rd generation cephalosporins are often used to treat invasive Salmonella infections in people. Furthermore, because the genes were plasmid borne there is greater likelihood for horizontal transfer of these genes to other bacterial strains.